PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC49_p8
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 549aa    MW: 62576.1 Da    PI: 5.1971
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC49_p8genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12311354755
               HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +ErrRR+++N+++  Lr+l+P       +Kl+ a+iL  A++Y+k+Lq
  RrC49_p8 311 HAERRRRKKLNDRLYALRSLVPRI-----TKLDRASILGDAINYVKELQ 354
               68*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-1910151IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000832.94E-14303356No hitNo description
PROSITE profilePS5088816.247304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-17306369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-16310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-10311354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16312367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MENNMQILLE KLRPLVGARA WDYCVLWRLN EDQRFLKWMG CCCGGTLLLI EENETEEFSF  60
RGCRDVMFHH LRTKSCEFLA HLPSSIPLDS GIYAETLLTN QTGWLTESSE PGFMQETICT  120
RVLVPIPGGL VELFATRHVA EDQNVVDFVM NMLMDGTVTI NMMVADEVES KPYGMLPGEI  180
HQKGSSKDEE MIMNLQSPYD ISADQIRLNF LPQMNDYESQ QHLKMKSGYD HHQDLGPYLA  240
ENGNNMNPFN TVGEEGVGEP SLLVKEQQVA NDKEMNHENA TGSECSDQID DEDDPKCKKK  300
TGKHTQAKNL HAERRRRKKL NDRLYALRSL VPRITKLDRA SILGDAINYV KELQNEAKEL  360
QDELEENSET EDGSNRQQVG MSLNGTVVTG FHPGLLCNSN VPGLKQDPQV DVAQLDGREF  420
FVKVICEYKP GGFTRLMEAL DSLGLEVTNA NTTRFLSLVS NVFKVEKTDS EMVPAEHVRN  480
SLLEITRNTS RGWHDDQMAT ASMQNEKNEV DYQHYDDHHH HGGHHQLHDH QMNQSAHHHH  540
QHINHYQNQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297318KKKTGKHTQAKNLHAERRRRKK
2312319ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5119910.0AJ511991.1 Brassica napus mRNA for bHLH transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001302958.10.0transcription factor ABORTED MICROSPORES-like
SwissprotQ9ZVX20.0AMS_ARATH; Transcription factor ABORTED MICROSPORES
TrEMBLQ84WX10.0Q84WX1_BRANA; BHLH transcription factor
STRINGBra002004.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75892741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.10.0bHLH family protein